這個(gè)問題困擾一天兩夜,記錄一下
解決辦法參考s1
問題:
Shiny 接收多個(gè)文件,每個(gè)文件生成一張圖片,結(jié)束。最后將地址通過 params 傳給 Rmarkdown(Rmd),生成報(bào)告。這里面需要在Rmd中進(jìn)行遍歷,但是在for loop中遍歷 使用knitr::include_graphics() 無法在Rmd展示圖片。Demo Code:
Shiny
library(shiny)
shinyApp(
ui = fluidPage(
textInput("s1", "Description 1", "image1.png"),
textInput("s2", "Description 2", "image2.png"),
downloadButton("report", "Generate report")
),
server = function(input, output) {
output$report <- downloadHandler(
filename = "report.html",
content = function(file) {
tempReport <- file.path(tempdir(), "report.Rmd")
file.copy("volcano2.Rmd", tempReport, overwrite = TRUE)
params <- list(tag = c(input$s1, input$2"))
rmarkdown::render(tempReport, output_file = file,
params = params,
envir = new.env(parent = globalenv())
)
}
)
}
)
為了突出主要問題,這里直接把已經(jīng)存在tempdir()的圖片名作為 params。
volcano2.Rmd
---
title: <center>xxxx</center>
author: <center>`r knitr::opts_chunk$set(echo = FALSE, out.width="30%")``r knitr::include_graphics(paste("G:\\Project\\workspace","www\\xxx.jpg",sep="\\"))`</center>
date: <center>`r format(Sys.Date(),'%Y-%m-%d')`</center>
runtime: "static"
params:
tag: NA
output:
html_document:
toc: no
toc_float: yes
keep_md: true
theme: flatly
number_sections: false
---
``` {r}
knitr::opts_chunk$set(echo = FALSE, message = TRUE, warning = TRUE) ``` # Rmd的R 代碼塊于md語法的代碼一樣,為了避免歧義這樣寫
# xxxxx
  1234
### {.tabset .tabset-fade .tabset-pills}
```{r, results='asis', out.width='60%', echo=FALSE}
n <- params$tag
for (i in n){
cat("#### " ,i, "\n\n")
a <- paste(tempdir(), i, sep = "\\")
cat(knitr::include_graphics(a))
# knitr::include_graphics(a)
cat('\n\n')
} ```
### {-}
cat(knitr::include_graphics(a))
不出圖的原因參見yihui : include_graphics() has to be used in top-level R expressions. 即無法在循環(huán)內(nèi)使用,因此解決辦法有:
1. Rmd插入圖片,但是無法改樣式
```{r, results='asis', out.width='60%', echo=FALSE}
n <- params$tag
for (i in n){
cat("#### " ,i, "\n\n")
a <- paste(tempdir(), i, sep = "\\")
aaa #見下面
cat('\n\n')
} ```
2.HTML插入圖片,可以改樣式,推薦!!!
```{r, results='asis', out.width='60%', echo=FALSE}
n <- params$tag
for (i in n){
cat("#### " ,i, "\n\n")
a <- paste(tempdir(), i, sep = "\\")
cat("<img src=",a," width='60%' height='60%' align = center />")
cat('\n\n')
} ```
aaa : cat("[圖片上傳失敗...(image-3b0c65-1598935814989)]")